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biopet.biopet
Commits
08560e40
Commit
08560e40
authored
Mar 14, 2017
by
Peter van 't Hof
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biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/SummaryQScript.scala
...ala/nl/lumc/sasc/biopet/core/summary/SummaryQScript.scala
+16
-16
No files found.
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/SummaryQScript.scala
View file @
08560e40
...
...
@@ -164,6 +164,22 @@ trait SummaryQScript extends BiopetQScript { qscript: QScript =>
}
}
qscript
match
{
case
q
:
MultiSampleQScript
=>
// Global level
for
((
key
,
file
)
<-
qscript
.
summaryFiles
)
addChecksum
(
file
)
for
((
sampleName
,
sample
)
<-
q
.
samples
)
{
// Sample level
for
((
key
,
file
)
<-
sample
.
summaryFiles
)
addChecksum
(
file
)
for
((
libName
,
lib
)
<-
sample
.
libraries
)
{
// Library level
for
((
key
,
file
)
<-
lib
.
summaryFiles
)
addChecksum
(
file
)
}
}
case
q
=>
for
((
key
,
file
)
<-
q
.
summaryFiles
)
addChecksum
(
file
)
}
for
(
inputFile
<-
inputFiles
)
{
inputFile
.
md5
match
{
case
Some
(
checksum
)
=>
{
...
...
@@ -189,22 +205,6 @@ trait SummaryQScript extends BiopetQScript { qscript: QScript =>
case
_
=>
add
(
writeSummary
)
}
qscript
match
{
case
q
:
MultiSampleQScript
=>
// Global level
for
((
key
,
file
)
<-
qscript
.
summaryFiles
)
addChecksum
(
file
)
for
((
sampleName
,
sample
)
<-
q
.
samples
)
{
// Sample level
for
((
key
,
file
)
<-
sample
.
summaryFiles
)
addChecksum
(
file
)
for
((
libName
,
lib
)
<-
sample
.
libraries
)
{
// Library level
for
((
key
,
file
)
<-
lib
.
summaryFiles
)
addChecksum
(
file
)
}
}
case
q
=>
for
((
key
,
file
)
<-
q
.
summaryFiles
)
addChecksum
(
file
)
}
addedJobs
=
true
}
}
...
...
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