From 071c803118af6c27244b3d9bf22e332f4120bf98 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 3 Nov 2014 18:12:56 +0100
Subject: [PATCH] Added imports
---
.../scala/nl/lumc/sasc/biopet/core/config/Configurable.scala | 1 +
.../nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala | 1 +
2 files changed, 2 insertions(+)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/config/Configurable.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/config/Configurable.scala
index b9eb07879..62cd27d6b 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/config/Configurable.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/config/Configurable.scala
@@ -2,6 +2,7 @@ package nl.lumc.sasc.biopet.core.config
import java.io.File
import org.broadinstitute.gatk.queue.util.Logging
+import scala.language.implicitConversions
trait Configurable extends Logging {
val root: Configurable
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala
index c39a2fc85..465a946ee 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala
@@ -10,6 +10,7 @@ import org.broadinstitute.gatk.queue.QScript
import org.broadinstitute.gatk.queue.extensions.gatk.TaggedFile
import org.broadinstitute.gatk.utils.commandline.{ Input, Output, Argument }
import scala.collection.SortedMap
+import scala.language.reflectiveCalls
class GatkVariantcalling(val root: Configurable) extends QScript with BiopetQScript {
def this() = this(null)
--
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