From 01d3e5d818af46d7798f95032795df6631bc8450 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 17 May 2016 16:11:49 +0200
Subject: [PATCH] Added test for gtf down
---
.../generateindexes/GenerateIndexesTest.scala | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/generate-indexes/src/test/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexesTest.scala b/generate-indexes/src/test/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexesTest.scala
index 804b36f6d..7b5ac21ac 100644
--- a/generate-indexes/src/test/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexesTest.scala
+++ b/generate-indexes/src/test/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexesTest.scala
@@ -65,6 +65,20 @@ class GenerateIndexesTest extends TestNGSuite with Matchers {
pipeline.script()
}
+ @Test
+ def testGtfZipped: Unit = {
+ val pipeline = initPipeline(Map())
+ pipeline.referenceConfig = Map("s1" -> Map("g1" -> Map("fasta_uri" -> "uri", "gtf_uri" -> "bla.gf.gz")))
+ pipeline.script()
+ }
+
+ @Test
+ def testGtf: Unit = {
+ val pipeline = initPipeline(Map())
+ pipeline.referenceConfig = Map("s1" -> Map("g1" -> Map("fasta_uri" -> "uri", "gtf_uri" -> "bla.gf")))
+ pipeline.script()
+ }
+
}
object GenerateIndexesTest {
--
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