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biopet.biopet
Commit 00cd14f3 authored by pjvan_thof's avatar pjvan_thof
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Fixing compile error

parent 9a538c59
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
View file @ 00cd14f3
......@@ -181,7 +181,7 @@ class Shiva(val parent: Configurable) extends QScript with MultisampleMappingTra
Some(makeVariantcalling(multisample = false, sample = Some(sampleId)))
} else None
override def keepMergedFiles: Boolean = config("keep_merged_files", default = !useIndelRealigner))
override def keepMergedFiles: Boolean = config("keep_merged_files", default = !useIndelRealigner)
lazy val useIndelRealigner: Boolean = config("use_indel_realigner", default = true)
......
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