Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
00cd14f3
Commit
00cd14f3
authored
Apr 24, 2017
by
pjvan_thof
Browse files
Fixing compile error
parent
9a538c59
Changes
1
Hide whitespace changes
Inline
Side-by-side
shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
View file @
00cd14f3
...
...
@@ -181,7 +181,7 @@ class Shiva(val parent: Configurable) extends QScript with MultisampleMappingTra
Some
(
makeVariantcalling
(
multisample
=
false
,
sample
=
Some
(
sampleId
)))
}
else
None
override
def
keepMergedFiles
:
Boolean
=
config
(
"keep_merged_files"
,
default
=
!
useIndelRealigner
)
)
override
def
keepMergedFiles
:
Boolean
=
config
(
"keep_merged_files"
,
default
=
!
useIndelRealigner
)
lazy
val
useIndelRealigner
:
Boolean
=
config
(
"use_indel_realigner"
,
default
=
true
)
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment