From 006e38a7c16a3343cfd99e7c17494d37a682cbe9 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 17 May 2016 11:56:57 +0200
Subject: [PATCH] Add input annotation
---
.../src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala | 1 +
1 file changed, 1 insertion(+)
diff --git a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala
index 04d2a39b6..8cda600b2 100644
--- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala
+++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala
@@ -75,6 +75,7 @@ class Star(val root: Configurable) extends BiopetCommandLineFunction with Refere
var genomeSAindexNbases: Option[Int] = config("genomesaindexnbases")
var genomeSAsparseD: Option[Int] = config("genomesasparsed")
+ @Input(required = false)
var sjdbGTFfile: Option[File] = config("sjdbgtfile")
var sjdbGTFchrPrefix: Option[String] = config("sjdbgtfchrprefix")
var sjdbGTFfeatureExon: Option[String] = config("sjdbgtffeatureexon")
--
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