From 006e38a7c16a3343cfd99e7c17494d37a682cbe9 Mon Sep 17 00:00:00 2001 From: Peter van 't Hof Date: Tue, 17 May 2016 11:56:57 +0200 Subject: [PATCH] Add input annotation --- .../src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala | 1 + 1 file changed, 1 insertion(+) diff --git a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala index 04d2a39b6..8cda600b2 100644 --- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala +++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala @@ -75,6 +75,7 @@ class Star(val root: Configurable) extends BiopetCommandLineFunction with Refere var genomeSAindexNbases: Option[Int] = config("genomesaindexnbases") var genomeSAsparseD: Option[Int] = config("genomesasparsed") + @Input(required = false) var sjdbGTFfile: Option[File] = config("sjdbgtfile") var sjdbGTFchrPrefix: Option[String] = config("sjdbgtfchrprefix") var sjdbGTFfeatureExon: Option[String] = config("sjdbgtffeatureexon") -- GitLab