pom.xml 2.86 KB
Newer Older
Peter van 't Hof's avatar
Peter van 't Hof committed
1
<?xml version="1.0" encoding="UTF-8"?>
Peter van 't Hof's avatar
Peter van 't Hof committed
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
<!--

    Biopet is built on top of GATK Queue for building bioinformatic
    pipelines. It is mainly intended to support LUMC SHARK cluster which is running
    SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
    should also be able to execute Biopet tools and pipelines.

    Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center

    Contact us at: sasc@lumc.nl

    A dual licensing mode is applied. The source code within this project that are
    not part of GATK Queue is freely available for non-commercial use under an AGPL
    license; For commercial users or users who do not want to follow the AGPL
    license, please contact us to obtain a separate license.

-->
Peter van 't Hof's avatar
Peter van 't Hof committed
19
20
21
22
23
24
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <parent>
        <artifactId>Biopet</artifactId>
        <groupId>nl.lumc.sasc</groupId>
25
        <version>0.6.0-SNAPSHOT</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
26
        <relativePath>../</relativePath>
Peter van 't Hof's avatar
Peter van 't Hof committed
27
28
29
30
    </parent>
    <modelVersion>4.0.0</modelVersion>

    <artifactId>BiopetCore</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
31
    <packaging>jar</packaging>
Peter van 't Hof's avatar
Peter van 't Hof committed
32

Peter van 't Hof's avatar
Peter van 't Hof committed
33
    <dependencies>
Peter van 't Hof's avatar
Peter van 't Hof committed
34
35
36
        <dependency>
            <groupId>nl.lumc.sasc</groupId>
            <artifactId>BiopetUtils</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
37
            <version>${project.version}</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
38
        </dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
        <dependency>
            <groupId>org.testng</groupId>
            <artifactId>testng</artifactId>
            <version>6.8</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-all</artifactId>
            <version>1.9.5</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.scalatest</groupId>
            <artifactId>scalatest_2.10</artifactId>
            <version>2.2.1</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.broadinstitute.gatk</groupId>
            <artifactId>gatk-queue</artifactId>
            <version>3.4</version>
61
62
63
64
65
66
            <exclusions>
                <exclusion>
                    <groupId>org.broadinstitute.gatk</groupId>
                    <artifactId>gsalib</artifactId>
                </exclusion>
            </exclusions>
Peter van 't Hof's avatar
Peter van 't Hof committed
67
        </dependency>
68
69
70
71
72
        <dependency>
            <groupId>org.broadinstitute.gatk</groupId>
            <artifactId>gatk-queue-extensions-public</artifactId>
            <version>3.4</version>
        </dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
73
74
75
76
77
78
        <dependency>
            <groupId>org.scalatra.scalate</groupId>
            <artifactId>scalate-core_2.10</artifactId>
            <version>1.7.0</version>
        </dependency>
    </dependencies>
Peter van 't Hof's avatar
Peter van 't Hof committed
79
80

</project>