pom.xml 6.73 KB
Newer Older
1
2
3
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
Peter van 't Hof's avatar
Peter van 't Hof committed
4
    <artifactId>Biopet</artifactId>
5
    <groupId>nl.lumc.sasc</groupId>
Peter van 't Hof's avatar
Peter van 't Hof committed
6
7
    <name>Biopet</name>
    <packaging>pom</packaging>
8
9
    <version>0.2.0-DEV</version>
    
10
11
    <modules>
        <module>biopet-framework</module>
12
        <module>biopet-public-package</module>
13
14
15
16
17
18
        <module>bammetrics</module>
        <module>flexiprep</module>
        <module>gentrap</module>
        <module>mapping</module>
        <module>sage</module>
        <module>yamsvp</module>
19
    </modules>
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
    
    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    </properties>
    
    <build>
        <resources>
            <resource>
                <directory>src/main/resources</directory>
                <includes>
                    <include>**/*</include>
                </includes>
            </resource>
        </resources>
        <plugins>
            <plugin>
                <groupId>org.scala-tools</groupId>
                <artifactId>maven-scala-plugin</artifactId>
                <version>2.15.2</version>
                <executions>
                    <execution>
                        <id>scala-compile</id>
                        <goals>
                            <goal>compile</goal>
                            <goal>testCompile</goal>
                        </goals>
                        <configuration>
                            <args>
                                <arg>-dependencyfile</arg>
                                <arg>${project.build.directory}/.scala_dependencies</arg>
                                <arg>-deprecation</arg>
                                <arg>-feature</arg>
                            </args>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>2.5</version>
                <configuration>
                    <archive>
                        <manifest>
                            <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                            <addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>2.3.2</version>
                <configuration>
                    <showDeprecation>true</showDeprecation>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.scalariform</groupId>
                <artifactId>scalariform-maven-plugin</artifactId>
                <version>0.1.4</version>
                <executions>
                    <execution>
                        <phase>process-sources</phase>
                        <goals>
                            <goal>format</goal>
                        </goals>
                        <configuration>
                            <rewriteArrowSymbols>false</rewriteArrowSymbols>
                            <alignParameters>true</alignParameters>
                            <alignSingleLineCaseStatements_maxArrowIndent>40
                            </alignSingleLineCaseStatements_maxArrowIndent>
                            <alignSingleLineCaseStatements>true</alignSingleLineCaseStatements>
                            <compactStringConcatenation>false</compactStringConcatenation>
                            <compactControlReadability>false</compactControlReadability>
                            <doubleIndentClassDeclaration>false</doubleIndentClassDeclaration>
                            <formatXml>true</formatXml>
                            <indentLocalDefs>false</indentLocalDefs>
                            <indentPackageBlocks>true</indentPackageBlocks>
                            <indentSpaces>2</indentSpaces>
                            <placeScaladocAsterisksBeneathSecondAsterisk>false
                            </placeScaladocAsterisksBeneathSecondAsterisk>
                            <preserveDanglingCloseParenthesis>true</preserveDanglingCloseParenthesis>
                            <preserveSpaceBeforeArguments>false</preserveSpaceBeforeArguments>
                            <rewriteArrowSymbols>false</rewriteArrowSymbols>
                            <spaceBeforeColon>false</spaceBeforeColon>
                            <spaceInsideBrackets>false</spaceInsideBrackets>
                            <spaceInsideParentheses>false</spaceInsideParentheses>
                            <spacesWithinPatternBinders>true</spacesWithinPatternBinders>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>pl.project13.maven</groupId>
                <artifactId>git-commit-id-plugin</artifactId>
                <version>2.1.10</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>revision</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <prefix>git</prefix>
                    <dateFormat>dd.MM.yyyy '@' HH:mm:ss z</dateFormat>
                    <verbose>false</verbose>
Peter van 't Hof's avatar
Peter van 't Hof committed
129
                    <dotGitDirectory>${basedir}/../../.git</dotGitDirectory>
130
131
132
133
134
                    <useNativeGit>true</useNativeGit>
                    <skipPoms>false</skipPoms>
                    <generateGitPropertiesFile>true</generateGitPropertiesFile>
                    <generateGitPropertiesFilename>src/main/resources/git.properties</generateGitPropertiesFilename>
                    <failOnNoGitDirectory>false</failOnNoGitDirectory>
Peter van 't Hof's avatar
Peter van 't Hof committed
135
                    <abbrevLength>8</abbrevLength>
136
137
138
139
140
                    <skip>false</skip>
                    <excludeProperties></excludeProperties>
                    <gitDescribe>
                        <skip>false</skip>
                        <always>false</always>
Peter van 't Hof's avatar
Peter van 't Hof committed
141
                        <abbrev>8</abbrev>
142
143
144
145
146
147
148
                        <dirty>-dirty</dirty>
                        <forceLongFormat>false</forceLongFormat>
                    </gitDescribe>
                </configuration>
            </plugin>
        </plugins>
    </build>
149
</project>