pom.xml 3.24 KB
Newer Older
Peter van 't Hof's avatar
Peter van 't Hof committed
1
<?xml version="1.0" encoding="UTF-8"?>
Peter van 't Hof's avatar
Peter van 't Hof committed
2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18
<!--

    Biopet is built on top of GATK Queue for building bioinformatic
    pipelines. It is mainly intended to support LUMC SHARK cluster which is running
    SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
    should also be able to execute Biopet tools and pipelines.

    Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center

    Contact us at: sasc@lumc.nl

    A dual licensing mode is applied. The source code within this project that are
    not part of GATK Queue is freely available for non-commercial use under an AGPL
    license; For commercial users or users who do not want to follow the AGPL
    license, please contact us to obtain a separate license.

-->
Peter van 't Hof's avatar
Peter van 't Hof committed
19 20 21 22 23 24
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <parent>
        <artifactId>Biopet</artifactId>
        <groupId>nl.lumc.sasc</groupId>
25
        <version>0.7.0-SNAPSHOT</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
26
        <relativePath>../</relativePath>
Peter van 't Hof's avatar
Peter van 't Hof committed
27 28 29 30
    </parent>
    <modelVersion>4.0.0</modelVersion>

    <artifactId>BiopetUtils</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
31
    <packaging>jar</packaging>
Peter van 't Hof's avatar
Peter van 't Hof committed
32

Peter van 't Hof's avatar
Peter van 't Hof committed
33
    <dependencies>
Peter van 't Hof's avatar
Peter van 't Hof committed
34 35 36 37 38
        <dependency>
            <groupId>colt</groupId>
            <artifactId>colt</artifactId>
            <version>1.2.0</version>
        </dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56
        <dependency>
            <groupId>org.testng</groupId>
            <artifactId>testng</artifactId>
            <version>6.8</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-all</artifactId>
            <version>1.9.5</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.scalatest</groupId>
            <artifactId>scalatest_2.10</artifactId>
            <version>2.2.1</version>
            <scope>test</scope>
        </dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
57 58 59 60 61 62
        <dependency>
            <groupId>log4j</groupId>
            <artifactId>log4j</artifactId>
            <version>1.2.17</version>
        </dependency>
        <dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
63
            <groupId>commons-io</groupId>
Peter van 't Hof's avatar
Peter van 't Hof committed
64
            <artifactId>commons-io</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
65
            <version>2.1</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
66 67 68 69
        </dependency>
        <dependency>
            <groupId>com.github.samtools</groupId>
            <artifactId>htsjdk</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
70
            <version>1.141</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86
        </dependency>
        <dependency>
            <groupId>org.scala-lang</groupId>
            <artifactId>scala-library</artifactId>
            <version>2.10.4</version>
        </dependency>
        <dependency>
            <groupId>org.yaml</groupId>
            <artifactId>snakeyaml</artifactId>
            <version>1.15</version>
        </dependency>
        <dependency>
            <groupId>io.argonaut</groupId>
            <artifactId>argonaut_2.10</artifactId>
            <version>6.1-M4</version>
        </dependency>
87 88 89 90 91
        <dependency>
            <groupId>com.github.scopt</groupId>
            <artifactId>scopt_2.10</artifactId>
            <version>3.3.0</version>
        </dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
92
    </dependencies>
Peter van 't Hof's avatar
Peter van 't Hof committed
93
</project>