BiopetExecutableProtected.scala 699 Bytes
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/**
 * Due to the license issue with GATK, this part of Biopet can only be used inside the
 * LUMC. Please refer to https://git.lumc.nl/biopet/biopet/wikis/home for instructions
 * on how to use this protected part of biopet or contact us at sasc@lumc.nl
 */
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package nl.lumc.sasc.biopet

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import nl.lumc.sasc.biopet.utils.{ BiopetExecutable, MainCommand }
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object BiopetExecutableProtected extends BiopetExecutable {
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  def pipelines: List[MainCommand] = BiopetExecutablePublic.publicPipelines ::: List(
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    nl.lumc.sasc.biopet.pipelines.gatk.Shiva,
    nl.lumc.sasc.biopet.pipelines.gatk.ShivaVariantcalling,
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    nl.lumc.sasc.biopet.pipelines.gatk.Basty)
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  def tools = BiopetExecutablePublic.tools
}