pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>nl.lumc.sasc</groupId>
    <artifactId>BiopetFramework</artifactId>
    <packaging>jar</packaging>
    
    <parent>
        <groupId>nl.lumc.sasc</groupId>
        <artifactId>Biopet</artifactId>
        <version>0.2.0-rc1</version>
        <relativePath>../</relativePath>
    </parent>
    
    <inceptionYear>2014</inceptionYear>
    <name>BiopetFramework</name>

    <repositories>
        <repository>
            <id>biojava-maven-repo</id>
            <name>BioJava repository</name>
            <url>http://www.biojava.org/download/maven/</url>
        </repository>
    </repositories>
    <dependencies>
        <dependency>
            <groupId>org.testng</groupId>
            <artifactId>testng</artifactId>
            <version>6.8</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-all</artifactId>
            <version>1.9.5</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.scalatest</groupId>
            <artifactId>scalatest_2.11</artifactId>
            <version>2.2.1</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.scala-lang</groupId>
            <artifactId>scala-library</artifactId>
            <version>2.11.2</version>
        </dependency>
        <dependency>
            <groupId>org.broadinstitute.gatk</groupId>
            <artifactId>gatk-queue</artifactId>
            <version>3.3</version>
        </dependency>
        <dependency>
            <groupId>org.broadinstitute.gatk</groupId>
            <artifactId>gatk-queue-extensions-distribution</artifactId>
            <version>3.3</version>
        </dependency>
        <dependency>
            <groupId>org.broadinstitute.gatk</groupId>
            <artifactId>gatk-utils</artifactId>
            <version>3.3</version>
            <exclusions>
                <exclusion>
                  <groupId>org.broadinstitute.gatk</groupId>
                  <artifactId>gsalib</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>io.argonaut</groupId>
            <artifactId>argonaut_2.11</artifactId>
            <version>6.1-M4</version>
        </dependency>
        <dependency>
            <groupId>org.biojava</groupId>
            <artifactId>biojava3-core</artifactId>
            <version>3.1.0</version>
        </dependency>
        <dependency>
            <groupId>org.biojava</groupId>
            <artifactId>biojava3-sequencing</artifactId>
            <version>3.1.0</version>
        </dependency>
        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
            <version>18.0</version>
        </dependency>
        <dependency>
            <groupId>com.github.scopt</groupId>
            <artifactId>scopt_2.10</artifactId>
            <version>3.2.0</version>
        </dependency>
    </dependencies>
</project>