site_name: Biopet user manual
pages: - ['index.md', 'Home']
- ['config.md', 'Config']
- ['pipelines/basty.md', 'Pipelines', 'Basty'] - ['pipelines/GATK-pipeline.md', 'Pipelines', 'GATK-pipeline'] - ['pipelines/flexiprep.md', 'Pipelines', 'Flexiprep'] - ['pipelines/mapping.md', 'Pipelines', 'Mapping'] - ['pipelines/sage.md', 'Pipelines', 'Sage']
- ['tools/SamplesTsvToJson.md','tools','SamplesTsvToJson'] - ['tools/BastyGenerateFasta.md','tools','BastyGenerateFasta']
- ['cluster/oge.md', 'OpenGridEngine'] - ['about.md', 'About'] - ['license.md', 'License'] theme: readthedocs repo_url: https://git.lumc.nl/biopet/biopet
