test.json 1011 Bytes
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{
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    "inputtype": "rna",
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    "fastqc": { "exe": "/home/pjvan_thof/Downloads/FastQC/fastqc" },
    "bwa" : {"exe":"/home/pjvan_thof/pipelines/test/test"},
    "flexiprep": {
        "fastqc": {"exe":"/home/pjvan_thof/pipelines/test/test"},
        "cutadapt": {"exe":"/home/pjvan_thof/pipelines/test/test"},
        "sickle": {"exe":"/home/pjvan_thof/pipelines/test/test"}
    },
    "gatk": {
        "referenceFile" : "/home/pjvan_thof/pipelines/test/test",
        "dbsnp": "/home/pjvan_thof/pipelines/test/test",
        "hapmap": "/home/pjvan_thof/pipelines/test/test",
        "omni": "/home/pjvan_thof/pipelines/test/test",
        "1000G": "/home/pjvan_thof/pipelines/test/test",
        "mills": "/home/pjvan_thof/pipelines/test/test"
    },
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    "samples": {
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        "test": {
            "ID": "test",
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            "runs": {
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                "1" : {
                    "ID": "1",
                    "R1" : "/home/pjvan_thof/pipelines/test/test.fastq"
                }
            }
        }
    }
}