pom.xml 3.11 KB
Newer Older
Peter van 't Hof's avatar
Peter van 't Hof committed
1
<?xml version="1.0" encoding="UTF-8"?>
Peter van 't Hof's avatar
Peter van 't Hof committed
2
3
4
5
6
7
8
9
10
11
12
<!--

    Biopet is built on top of GATK Queue for building bioinformatic
    pipelines. It is mainly intended to support LUMC SHARK cluster which is running
    SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
    should also be able to execute Biopet tools and pipelines.

    Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center

    Contact us at: sasc@lumc.nl

13
    A dual licensing mode is applied. The source code within this project is freely available for non-commercial use under an AGPL
Peter van 't Hof's avatar
Peter van 't Hof committed
14
15
16
17
    license; For commercial users or users who do not want to follow the AGPL
    license, please contact us to obtain a separate license.

-->
Peter van 't Hof's avatar
Peter van 't Hof committed
18
19
20
21
22
23
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <parent>
        <artifactId>Biopet</artifactId>
        <groupId>nl.lumc.sasc</groupId>
24
        <version>0.9.0-SNAPSHOT</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
25
        <relativePath>../</relativePath>
Peter van 't Hof's avatar
Peter van 't Hof committed
26
27
28
29
    </parent>
    <modelVersion>4.0.0</modelVersion>

    <artifactId>BiopetUtils</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
30
    <packaging>jar</packaging>
Peter van 't Hof's avatar
Peter van 't Hof committed
31

Peter van 't Hof's avatar
Peter van 't Hof committed
32
    <dependencies>
Peter van 't Hof's avatar
Peter van 't Hof committed
33
34
35
36
37
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-simple</artifactId>
            <version>1.7.25</version>
        </dependency>
38
        <dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
39
            <groupId>com.typesafe.slick</groupId>
Peter van 't Hof's avatar
Peter van 't Hof committed
40
            <artifactId>slick_2.11</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
41
42
43
            <version>3.1.1</version>
        </dependency>
        <dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
44
45
            <groupId>org.xerial</groupId>
            <artifactId>sqlite-jdbc</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
46
            <version>3.8.6</version>
47
        </dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
48
49
50
51
52
        <dependency>
            <groupId>colt</groupId>
            <artifactId>colt</artifactId>
            <version>1.2.0</version>
        </dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
53
54
55
56
57
58
        <dependency>
            <groupId>log4j</groupId>
            <artifactId>log4j</artifactId>
            <version>1.2.17</version>
        </dependency>
        <dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
59
            <groupId>commons-io</groupId>
Peter van 't Hof's avatar
Peter van 't Hof committed
60
            <artifactId>commons-io</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
61
            <version>2.1</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
62
63
64
65
        </dependency>
        <dependency>
            <groupId>com.github.samtools</groupId>
            <artifactId>htsjdk</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
66
            <version>2.4.1</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
67
68
69
70
        </dependency>
        <dependency>
            <groupId>org.scala-lang</groupId>
            <artifactId>scala-library</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
71
            <version>2.11.4</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
72
73
74
75
        </dependency>
        <dependency>
            <groupId>org.yaml</groupId>
            <artifactId>snakeyaml</artifactId>
76
            <version>1.17</version>
Peter van 't Hof's avatar
Peter van 't Hof committed
77
78
79
        </dependency>
        <dependency>
            <groupId>io.argonaut</groupId>
Peter van 't Hof's avatar
Peter van 't Hof committed
80
            <artifactId>argonaut_2.11</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
81
82
            <version>6.1-M4</version>
        </dependency>
83
84
        <dependency>
            <groupId>com.github.scopt</groupId>
Peter van 't Hof's avatar
Peter van 't Hof committed
85
            <artifactId>scopt_2.11</artifactId>
Peter van 't Hof's avatar
Peter van 't Hof committed
86
            <version>3.5.0</version>
87
        </dependency>
Peter van 't Hof's avatar
Peter van 't Hof committed
88
    </dependencies>
Peter van 't Hof's avatar
Peter van 't Hof committed
89
</project>