Commit e9a77fea authored by Laros's avatar Laros
Browse files

Setup fix retry 4.

parent 549cc411
......@@ -31,17 +31,17 @@ To get substitutions in a readable format, we can use the following:
variants = subst_to_cds(substitutions, 12)
## Command line interface
Use the command `back_translate` to find substitutions that explain an amino
Use the command `backtranslate` to find substitutions that explain an amino
acid change:
$ back_translate with_dna -o 210 data/mhv.fa - 1 Leu
$ backtranslate with_dna -o 210 data/mhv.fa - 1 Leu
1 A C
1 A T
If no reference is available, use the `without_dna` subcommand:
$ back_translate without_dna - Asp 92 Tyr
$ backtranslate without_dna - Asp 92 Tyr
274 G T
......@@ -50,7 +50,7 @@ to stop codons. This list of destructive substitutions are useful when
analysing a pool of viral transcripts. Counting the appropriate nucleotides at
the given positions gives insight into how many transcripts are active.
$ back_translate find_stops -o 210 data/mhv.fa -
$ backtranslate find_stops -o 210 data/mhv.fa -
216 A T
225 A T
230 C A
......
......@@ -71,8 +71,8 @@ setup(
packages=[package],
install_requires=dependencies,
entry_points={
'console_scripts': ['{0} = {0}.{0}:main'.format(package)]
},
'console_scripts': ['{0} = {0}.cli:main'.format(package)]
},
classifiers=classifiers,
keywords=' '.join(keywords)
)
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