Package rename.

.gitignore

-*.egg-info
 *.pyc
 .cache/
 .tox/
 build/
 dist/
+docs/Makefile
+docs/_build/
 examples/.ipynb_checkpoints/
+mutalyzer_backtranslate.egg-info

README.rst

@@ -5,14 +5,14 @@ Back translation
    :target: https://github.com/mutalyzer/backtranslate/graphs/commit-activity
 .. image:: https://travis-ci.org/mutalyzer/backtranslate.svg?branch=master
    :target: https://travis-ci.org/mutalyzer/backtranslate
-.. image:: https://readthedocs.org/projects/simplerpc/badge/?version=latest
-   :target: https://backtranslate.readthedocs.io/en/latest
+.. image:: https://readthedocs.org/projects/mutalyzer-backtranslate/badge/?version=latest
+   :target: https://mutalyzer-backtranslate.readthedocs.io/en/latest
 .. image:: https://img.shields.io/github/release-date/mutalyzer/backtranslate.svg
    :target: https://github.com/mutalyzer/backtranslate/releases
 .. image:: https://img.shields.io/github/release/mutalyzer/backtranslate.svg
    :target: https://github.com/mutalyzer/backtranslate/releases
-.. image:: https://img.shields.io/pypi/v/backtranslate.svg
-   :target: https://pypi.org/project/backtranslate/
+.. image:: https://img.shields.io/pypi/v/mutalyzer-backtranslate.svg
+   :target: https://pypi.org/project/mutalyzer-backtranslate/
 .. image:: https://img.shields.io/github/languages/code-size/mutalyzer/backtranslate.svg
    :target: https://github.com/mutalyzer/backtranslate
 .. image:: https://img.shields.io/github/languages/count/mutalyzer/backtranslate.svg
@@ -30,4 +30,4 @@ nucleotides.
 Please see ReadTheDocs_ for the latest documentation.
 
 
-.. _ReadTheDocs: https://backtranslate.readthedocs.io
+.. _ReadTheDocs: https://mutalyzer-backtranslate.readthedocs.io

docs/api.rst

+API documentation
+=================
+
+Main library
+------------
+
+.. automodule:: mutalyzer_backtranslate.backtranslate
+   :members:
+
+
+Utils
+-----
+
+.. automodule:: mutalyzer_backtranslate.util
+   :members:

docs/conf.py

+import os
+import subprocess
+import sys
+
+subprocess.call('pip install ..', shell=True)
+
+from mutalyzer_backtranslate import _get_metadata
+
+
+author = _get_metadata('Author')
+copyright = _get_metadata('Author')
+project = _get_metadata('Name')
+release = _get_metadata('Version')
+
+autoclass_content = 'both'
+extensions = ['sphinx.ext.autodoc']
+master_doc = 'index'

docs/index.rst

@@ -8,4 +8,5 @@
    install
    usage
    library
+   api
    credits

docs/install.rst

@@ -5,7 +5,7 @@ The software is distributed via PyPI_, it can be installed with ``pip``:
 
 ::
 
-    pip install backtranslate
+    pip install mutalyzer-backtranslate
 
 
 From source
@@ -21,5 +21,5 @@ the following commands.
     pip install .
 
 
-.. _PyPI: https://pypi.org/project/backtranslate/
+.. _PyPI: https://pypi.org/project/mutalyzer-backtranslate/
 .. _GitHub: https://github.com/mutalyzer/backtranslate

docs/library.rst

@@ -6,7 +6,7 @@ nucleotides.
 
 .. code:: python
 
-    >>> from backtranslate import BackTranslate
+    >>> from mutalyzer_backtranslate import BackTranslate
     >>>
     >>> # Create a class instance, optionally giving the translation table id.
     >>> bt = BackTranslate()
@@ -41,7 +41,7 @@ To get substitutions in a readable format, we can use the following:
 
 .. code:: python
 
-    >>> from backtranslate.util import subst_to_cds
+    >>> from mutalyzer_backtranslate.util import subst_to_cds
     >>>
     >>> substitutions = bt.without_dna('W', '*')
     >>>

backtranslate/backtranslate.py → mutalyzer_backtranslate/backtranslate.py

@@ -43,8 +43,7 @@ def reverse_translation_table(table_id=1):
 class BackTranslate(object):
     """Back translation."""
     def __init__(self, table_id=1):
-        """Initialise the class.
-
+        """
         :arg int table_id: Translation table id.
         """
         self._back_table = reverse_translation_table(table_id)

setup.cfg

 [metadata]
-name = backtranslate
-version = 0.1.2
+name = mutalyzer_backtranslate
+version = 0.1.3
 description = Functions for reverse translation.
 long_description = file: README.rst
 author = LUMC, Jeroen F.J. Laros
@@ -28,4 +28,4 @@ tests_require =
 
 [options.entry_points]
 console_scripts =
-    backtranslate = backtranslate.cli:main
+    backtranslate = mutalyzer_backtranslate.cli:main

tests/test_backtranslate.py

-"""Tests for the backtranslate.backtranslate module."""
-from backtranslate.backtranslate import BackTranslate, cmp_subst
+"""Tests for the backtranslate module."""
+from mutalyzer_backtranslate.backtranslate import BackTranslate, cmp_subst
 
 
 class TestParser(object):

tests/test_cli.py

@@ -6,7 +6,7 @@ from io import StringIO
 
 from fake_open import md5_check
 
-from backtranslate import cli
+from mutalyzer_backtranslate import cli
 
 
 class TestParser(object):