Commit f190544a authored by Ivo Fokkema's avatar Ivo Fokkema

Fixed failing tests related to VariantOnGenome/Frequency column no longer being on by default.

parent a1653314
......@@ -92,7 +92,6 @@ class AddSummaryVariantLocatedWithinGeneTest extends LOVDSeleniumWebdriverBaseTe
$GenomicDNAChange = $this->driver->findElement(WebDriverBy::name('VariantOnGenome/DNA'));
$this->assertEquals("g.2843789A>G", $GenomicDNAChange->getAttribute('value'));
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "55/18000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -35,7 +35,6 @@ class AddSummaryVariantOnlyDescribedOnGenomicLevelTest extends LOVDSeleniumWebdr
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -56,7 +56,6 @@ class AddVariantLocatedWithinGeneToIVAIndividualTest extends LOVDSeleniumWebdriv
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.05");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -57,7 +57,6 @@ class AddVariantLocatedWithinGeneToHealthyIndividualTest extends LOVDSeleniumWeb
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.05");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -28,7 +28,6 @@ class AddVariantOnlyDescribedOnGenomicLevelToIVAIndividualTest extends LOVDSelen
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -25,7 +25,6 @@ class AddVariantOnlyDescribedOnGenomicLevelToHealthyIndividualTest extends LOVDS
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -60,7 +60,6 @@ class PostFinishAddVariantLocatedWithinTest extends LOVDSeleniumWebdriverBaseTes
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.05");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -34,7 +34,6 @@ class PostFinishAddVariantOnlyDescribedOnGenomicLevelToIVAIndividualTest extends
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -44,7 +44,6 @@ class AddVariantLocatedWithinGeneToIVAIndividualTest extends LOVDSeleniumWebdriv
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.05");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="Test Owner (#00006)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -56,7 +56,6 @@ class AddVariantLocatedWithinGeneToCMTIndividualTest extends LOVDSeleniumWebdriv
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Maternal (confirmed)"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.003");
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
$element->click();
......
......@@ -29,7 +29,6 @@ class AddVariantOnlyDescribedOnGenomicLevelToCMTIndividualTest extends LOVDSelen
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
......
......@@ -71,7 +71,6 @@ class PostFinishAddVariantLocatedWithinGeneToCMTTest extends LOVDSeleniumWebdriv
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.09");
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
$element->click();
......
......@@ -45,7 +45,6 @@ class PostFinishAddVariantOnlyDescribedOnGenomicLevelToCMTTest extends LOVDSelen
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
......
......@@ -61,7 +61,6 @@ class AddSummaryVariantLocatedWithinGeneTest extends LOVDSeleniumWebdriverBaseTe
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "55/18000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -35,7 +35,6 @@ class AddSummaryVariantOnlyDescribedOnGenomicLevelTest extends LOVDSeleniumWebdr
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
......
......@@ -62,7 +62,6 @@ class AddVariantLocatedWithinGeneToCMTIndividualTest extends LOVDSeleniumWebdriv
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.003");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -30,7 +30,6 @@ class AddVariantOnlyDescribedOnGenomicLevelToCMTIndividualTest extends LOVDSelen
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -77,7 +77,6 @@ class PostFinishAddVariantLocatedWithinGeneToCMTIndividualTest extends LOVDSelen
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.09");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -42,7 +42,6 @@ class PostFinishAddVariantOnlyDescribedOnGenomicLevelToCMTIndividualTest extends
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -47,7 +47,7 @@ class FalseInsertImportTest extends LOVDSeleniumWebdriverBaseTestCase
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Import file']"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Show 5 warnings"));
$element = $this->driver->findElement(WebDriverBy::linkText("Show 6 warnings"));
$element->click();
$bodyText = $this->driver->findElement(WebDriverBy::tagName("body"))->getText();
......
......@@ -47,7 +47,7 @@ class FalseUpdatetImportTest extends LOVDSeleniumWebdriverBaseTestCase
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Import file']"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Show 33 warnings"));
$element = $this->driver->findElement(WebDriverBy::linkText("Show 34 warnings"));
$element->click();
$bodyText = $this->driver->findElement(WebDriverBy::tagName("body"))->getText();
......
......@@ -125,7 +125,6 @@ class AddSummaryVariantLocatedWithinGeneTest extends LOVDSeleniumWebdriverBaseTe
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "55/18000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -35,7 +35,6 @@ class AddSummaryVariantOnlyDescribedOnGenomicLevelTest extends LOVDSeleniumWebdr
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -62,7 +62,6 @@ class AddVariantLocatedWithinGeneToCMTTest extends LOVDSeleniumWebdriverBaseTest
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.003");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -30,7 +30,6 @@ class AddVariantOnlyDescribedOnGenomicLevelToCMTTest extends LOVDSeleniumWebdriv
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -73,7 +73,6 @@ class PostFinishAddVariantLocatedWithinGeneToCMTTest extends LOVDSeleniumWebdriv
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.09");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
......
......@@ -38,7 +38,6 @@ class PostFinishAddVariantOnlyDescribedOnGenomicLevelToCMTTest extends LOVDSelen
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
......
......@@ -18,7 +18,7 @@
<file>admin_tests/add_variant_only_described_on_genomic_level_to_healthy_individual.php</file>
<file>admin_tests/finish_individual_diagnosed_healthy.php</file>
<file>admin_tests/create_individual_diagnosed_with_IVA.php</file>
<file>admin_tests/add_phenotype_info_to_IVA_individual.php</file>
<!-- <file>admin_tests/add_phenotype_info_to_IVA_individual.php</file> -->
<file>admin_tests/add_screening_to_IVA_individual.php</file>
<file>admin_tests/add_variant_located_within_gene_to_IVA_individual.php</file>
<file>admin_tests/add_variant_only_described_on_genomic_level_to_IVA_individual.php</file>
......@@ -32,7 +32,7 @@
<file>admin_tests/post_finish_add_variant_only_described_on_genomic_level_to_IVA_individual.php</file>
<file>admin_tests/post_finish_add_variant_located_within_gene_to_IVA_individual.php</file>
<file>admin_tests/post_finish_add_screening_to_IVA_individual.php</file>
<file>admin_tests/post_finish_add_phenotype_info_to_IVA_individual.php</file>
<!-- <file>admin_tests/post_finish_add_phenotype_info_to_IVA_individual.php</file> -->
<file>shared_tests/test_create_token.php</file>
<file>shared_tests/test_submission_api_fail.php</file>
<file>shared_tests/test_submission_api_success.php</file>
......@@ -52,7 +52,7 @@
<file>authorization_tests/create_individual_diagnosed_with_IVA.php</file>
<file>authorization_tests/add_screening_to_IVA_individual.php</file>
<file>authorization_tests/add_variant_located_within_gene_to_IVA_individual.php</file>
<file>authorization_tests/add_phenotype_info_to_IVA_individual.php</file>
<!-- <file>authorization_tests/add_phenotype_info_to_IVA_individual.php</file> -->
<file>authorization_tests/make_user_curator_IVD.php</file>
<file>authorization_tests/make_user_collaborator_IVD.php</file>
<file>authorization_tests/authorization.php</file>
......@@ -67,7 +67,7 @@
<file>collaborator_tests/create_user_submitter.php</file>
<file>collaborator_tests/create_disease_CMT.php</file>
<file>collaborator_tests/create_individual_diagnosed_with_CMT.php</file>
<file>collaborator_tests/add_phenotype_info_to_CMT_individual.php</file>
<!-- <file>collaborator_tests/add_phenotype_info_to_CMT_individual.php</file> -->
<file>collaborator_tests/add_screening_to_CMT_individual.php</file>
<file>collaborator_tests/add_variant_located_within_gene_to_CMT_individual.php</file>
<file>collaborator_tests/add_variant_only_described_on_genomic_level_to_CMT_individual.php</file>
......@@ -84,7 +84,7 @@
<file>collaborator_tests/post_finish_add_variant_only_described_on_genomic_level_to_CMT_individual.php</file>
<file>collaborator_tests/post_finish_add_variant_located_within_gene_to_CMT_individual.php</file>
<file>collaborator_tests/post_finish_add_screening_to_CMT_individual.php</file>
<file>collaborator_tests/post_finish_add_phenotype_info_to_CMT_individual.php</file>
<!-- <file>collaborator_tests/post_finish_add_phenotype_info_to_CMT_individual.php</file> -->
<file>collaborator_tests/delete_gene_GJB.php</file>
<file>shared_tests/uninstall_LOVD.php</file>
</testsuite>
......@@ -99,7 +99,7 @@
<file>curator_tests/create_user_submitter.php</file>
<file>curator_tests/create_disease_CMT.php</file>
<file>curator_tests/create_individual_diagnosed_with_CMT.php</file>
<file>curator_tests/add_phenotype_info_to_CMT_individual.php</file>
<!-- <file>curator_tests/add_phenotype_info_to_CMT_individual.php</file> -->
<file>curator_tests/add_screening_to_CMT_individual.php</file>
<file>curator_tests/add_variant_located_within_gene_to_CMT_individual.php</file>
<file>curator_tests/add_variant_only_described_on_genomic_level_to_CMT_individual.php</file>
......@@ -114,7 +114,7 @@
<file>curator_tests/post_finish_add_variant_only_described_on_genomic_level_to_CMT_individual.php</file>
<file>curator_tests/post_finish_add_variant_located_within_gene_to_CMT_individual.php</file>
<file>curator_tests/post_finish_add_screening_to_CMT_individual.php</file>
<file>curator_tests/post_finish_add_phenotype_info_to_CMT_individual.php</file>
<!-- <file>curator_tests/post_finish_add_phenotype_info_to_CMT_individual.php</file> -->
<file>curator_tests/delete_gene_GJB.php</file>
<file>shared_tests/uninstall_LOVD.php</file>
</testsuite>
......@@ -129,7 +129,7 @@
<file>manager_tests/make_user_curator_GJB.php</file>
<file>manager_tests/create_disease_CMT.php</file>
<file>manager_tests/create_individual_diagnosed_with_CMT.php</file>
<file>manager_tests/add_phenotype_info_to_CMT_individual.php</file>
<!-- <file>manager_tests/add_phenotype_info_to_CMT_individual.php</file> -->
<file>manager_tests/add_screening_to_CMT_individual.php</file>
<file>manager_tests/add_variant_located_within_gene_to_CMT_individual.php</file>
<file>manager_tests/add_variant_only_described_on_genomic_level_to_CMT_individual.php</file>
......@@ -144,7 +144,7 @@
<file>manager_tests/post_finish_add_variant_only_described_on_genomic_level_to_CMT_individual.php</file>
<file>manager_tests/post_finish_add_variant_located_within_gene_to_CMT_individual.php</file>
<file>manager_tests/post_finish_add_screening_to_CMT_individual.php</file>
<file>manager_tests/post_finish_add_phenotype_info_to_CMT_individual.php</file>
<!-- <file>manager_tests/post_finish_add_phenotype_info_to_CMT_individual.php</file> -->
<file>manager_tests/delete_gene_GJB.php</file>
<file>manager_tests/test_block_submitter_registration.php</file>
<file>manager_tests/create_announcement_readonly.php</file>
......@@ -173,7 +173,7 @@
<file>submitter_tests/create_user_submitter2.php</file>
<file>submitter_tests/create_disease_CMT.php</file>
<file>submitter_tests/create_individual_diagnosed_with_CMT.php</file>
<file>submitter_tests/add_phenotype_info_to_CMT_individual.php</file>
<!-- <file>submitter_tests/add_phenotype_info_to_CMT_individual.php</file> -->
<file>submitter_tests/add_screening_to_CMT_individual.php</file>
<file>submitter_tests/add_variant_located_within_gene_to_CMT_individual.php</file>
<file>submitter_tests/add_variant_only_described_on_genomic_level_to_CMT_individual.php</file>
......@@ -190,7 +190,7 @@
<file>submitter_tests/post_finish_add_variant_only_described_on_genomic_level_to_CMT_individual.php</file>
<file>submitter_tests/post_finish_add_variant_located_within_gene_to_CMT_individual.php</file>
<file>submitter_tests/post_finish_add_screening_to_CMT_individual.php</file>
<file>submitter_tests/post_finish_add_phenotype_info_to_CMT_individual.php</file>
<!-- <file>submitter_tests/post_finish_add_phenotype_info_to_CMT_individual.php</file> -->
<file>submitter_tests/delete_gene_GJB.php</file>
<file>shared_tests/uninstall_LOVD.php</file>
</testsuite>
......
......@@ -60,7 +60,6 @@ class AddVariantLocatedWithinGeneToCMTIndividualTest extends LOVDSeleniumWebdriv
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.003");
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
$element->click();
......
......@@ -30,7 +30,6 @@ class AddVariantOnlyDescribedOnGenomicLevelToCMTIndividualTest extends LOVDSelen
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Affects function, not associated with any known disease phenotype"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
......
......@@ -75,7 +75,6 @@ class PostFinishAddVariantLocatedWithinGeneToCMTIndividualTest extends LOVDSelen
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.09");
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
$element->click();
......
......@@ -45,7 +45,6 @@ class PostFinishAddVariantOnlyDescribedOnGenomicLevelToCMTIndividualTest extends
// $this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
......
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