GitLab

Added feature to merge entries.

- Also, add an HTTP 301 Moved Permanently to the redirect.

For an Individual's VE, check if the Individual exists and if not, check if there is a MergeEntries log entry.
- If so, redirect the user to the Individual's new ID.

Fixed bug; Update the affected gene's updated dates based on the max status, not on the last entry's statusid.
- Anyway Screenings don't have a statusid.

Don't allow Screenings differing in variants_found to be merged, but safely merge differences in Template and Technique.

- Job array is prepared.
- Max status is retrieved from the Individuals table, as Screenings don't have their own status.
- $zData is loaded.

Add post action options to load another page, reload the current page, reload a VL, or uncheck all checkboxes.
- After a merge, uncheck all checkboxes, reload the VL, and redirect to the merged entry.

Fixed forgotten references to the curation script, improved formatting of conflicting columns and cleaned session data after processing the merge request.

Improved the "forgot your password" feature.

Updated password reset email body, clarifying the text and adding the current username to the output.
- Closes #448.

When resetting your password using an email address, mention the account's username in the log entry so we can still find these resets.

- I prefer deleting the entire file, but part of the suggestions and plans are still useful and should be stored elsewhere first.

Added support for the LOVD2 Variant/DbSNP column.

Added support for the LOVD2 Variant/DbSNP column, mapping it to VOG and converting the LOVD2 values.

Fixed mapping to genome feature.

Replaced waitForElement() calls with xpaths based on the value with the new waitForValueContains() convenience function.
- jQuery now uses val() to set fields instead of attr("value"), which means we can't use xpath anymore to wait for certain values.

Added waitForValueContains() convenience function to wait until a certain element's value contains the given string.
- jQuery now uses val() to set fields instead of attr("value"), which means we can't use xpath anymore to wait for certain values.

- jQuery now needs val() instead of attr('value') to get and set a field's value.

Fixed the link to the NCBI sequence viewer.

Fixed link to Ensembl by removing the name we added to it.

- The Ensembl genome browser ignores the BED track's name, and just puts "bed". The previous method we used to configure the name doesn't work anymore, it breaks the loading of the track. The documentation does not mention how to name your track, and anything that I've tried, failed.

Improved the Variant Validation script.

- Values like r.? and p.? were triggering updates, even though nothing would be changed.