1. 08 Aug, 2019 1 commit
    • Ivo Fokkema's avatar
      Updated the reference handling. · b5a9ca27
      Ivo Fokkema authored
      - Can now also handle DOIs.
      - Added support for {PMID:PubMed 2019 abstract:12345678} format. The script will fetch the paper's author and year using eutils and rewrite the reference to {PMID:Author et al (Year):12345678}.
      - Implemented a cache to make sure eutils doesn't get the same question twice.
      - Updated lovd_callJSONService() to be able to return an array instead of an object.
      b5a9ca27
  2. 19 Jan, 2018 1 commit
  3. 20 Nov, 2017 2 commits
  4. 17 Nov, 2017 1 commit
  5. 15 Nov, 2017 1 commit
    • mkroon's avatar
      Refactor viewlist() signature, adding options array. · acf41ce3
      mkroon authored
      * Introduced options array for object's viewlist() method.
      * Option values passed to the viewlist() method are leading, thereafter
        values are looked up in the session for the given viewlist ID, any
        remaining empty options are given a default value in the method
        itself.
      acf41ce3
  6. 18 Jul, 2017 1 commit
    • mkroon's avatar
      Misc. changes to lovd2 conversion. · a96f103a
      mkroon authored
      * Link `Variant/Origin` to `VariantOnGenome/Genetic_origin`.
      * Capitalize first letter of `VariantOnGenome/Genetic_origin`.
      * Link `Variant/Segregation` to `VariantOnGenome/Segregation`.
      * Link `Variant/Detection_Technique` to `Screening/Technique`.
      * Link `Variant/Frequency` to `VariantOnGenome/Frequency`.
      * Link `Variant/Location` to `VariantOnTranscript/Domain`.
      * Capitalize first letter of `Phenotype/Inheritance`.
      * Give default of "-" to `Phenotype/Inheritance`.
      * Link `Patient/Origin/Ethnic` to `Individual/Origin/Population`.
      * Link `Patient/Age` to `Phenotype/Age`.
      * Link `Patient/Phenotype/Age_exam` to `Phenotype/Age`.
      * Link `Patient/Phenotype/Age_onset` to `Phenotype/Age/Onset`.
      * Prefer `VariantOnGenome/Published_as` over
        `VariantOnTranscript/Published_as` for `Variant/DNA_published`.
      a96f103a
  7. 10 Jul, 2017 2 commits
  8. 27 Jun, 2017 1 commit
  9. 15 Jun, 2017 1 commit
  10. 01 Jun, 2017 3 commits
  11. 12 May, 2017 1 commit
  12. 10 May, 2017 2 commits
  13. 05 Apr, 2017 1 commit
  14. 15 Mar, 2017 1 commit
  15. 27 Jan, 2017 1 commit
  16. 26 Jan, 2017 3 commits
  17. 25 Jan, 2017 2 commits
  18. 23 Dec, 2016 4 commits
    • Ivo Fokkema's avatar
      Reviewing #158: · 528e3494
      Ivo Fokkema authored
      - Removed some unneeded column mappings.
      528e3494
    • Ivo Fokkema's avatar
      Reviewing #158: · 28372d12
      Ivo Fokkema authored
      - Removed some unneeded code.
      - Added error message when user translation table can't be parsed.
      - The genome build should not be assumed to be hg19.
      28372d12
    • Ivo Fokkema's avatar
      Reviewing #158: · e9b9a523
      Ivo Fokkema authored
      - Fixed the default values.
      - Removed some unneccessary code.
      e9b9a523
    • Ivo Fokkema's avatar
      Reviewing #158: · c6fd4886
      Ivo Fokkema authored
      - Fixed comments where outdated.
      - Other coding style changes.
      c6fd4886
  19. 15 Dec, 2016 2 commits
  20. 14 Dec, 2016 4 commits
  21. 13 Dec, 2016 5 commits