- Did a lot of work on the manual:
  * Fixed some markup problems in the manual.
  * Figures in the manual now have prettier captions and have a background with right frame instead of a somewhat loose frame.
  * Per section, added markings of required user level and since when this feature is included in LOVD.
  * Added chapter "LOVD Setup" to the manual, with sections "LOVD system settings", "System logs" and "Uninstalling LOVD".
  * Added chapter "Gene databases" to the manual, with sections "Creating a new gene database", "The gene homepage", "Editing a gene database" and "Deleting a gene database".
- When searching for a gene symbol on the "Create a new gene" form, LOVD now also searches for aliases if no match is found.
- From the gene data entry form, you can now open a new window to create new disease entries.
- Decreased size of some multiple selection lists, since they were too big in my point of view.
- From the individual data entry form, managers can now open a new window to create new disease entries. Other users get a note that they can include a missing disease in the individual's remarks field, such that a manager can configure the requested disease in the LOVD.
- Enabled the link to the RefSeq parser from the genes data entry form. Also added a prediction of the output file name. Only problem there is that we can't really predict that name since it depends on the transcript chosen. The RefSeq parser will have to be adapted to create a file that points to the several possible refseq files.
- Some whitespace problems fixed, mostly because I'm testing the PhpStorm IDE and I configured it to fix it automatically in edited files.


git-svn-id: https://humgenprojects.lumc.nl/svn/LOVD3/trunk@200 a7477d18-a37e-46de-aef1-57953c184492