- Fixed bug; When not logged in, no variant descriptions on transcripts could be viewed.
- SeattleSeq import will now describe variants as p.(=) only if they are more than 10 bases away from the nearest splice site.
- Removed some old commented code in setup.php.
- Added $_PE ($_PATH_ELEMENTS) for less typing and PATH_COUNT to prevent !empty($_PATH_ELEMENT[2]) calls.
- Fixed bug; the "External links" field could not be filled in with link descriptions, because the XSS security check didn't allow it.
- Fixed bug; lovd_checkXSS() was not properly protected against XSS itself.
- Cleaned up the gene homepage, which had way too many columns enabled.
- Added myself to the programmer's list where I forgot to do so in the past, and fixed "Programmer" header where it should be "Programmers" instead.
- The install and uninstall procedures now also use the template, which was modified to look more like the install/inc-top.php and install/inc-bot.php files.
  * Removed ROOT_PATH references in Template::printFooter() that made image loads fail in the install directory.
  * Removed last inc-top and inc-bot includes and removed all 6 include files.
- Fixed mistaken printHeader() that should have been a printFooter() in class/objects.php.
- Renamed _NOT_INSTALLED_ to NOT_INSTALLED, which is according to the coding standards.


git-svn-id: https://humgenprojects.lumc.nl/svn/LOVD3/trunk@165 a7477d18-a37e-46de-aef1-57953c184492