Commit 5b51b794 authored by rrvandenberg's avatar rrvandenberg

Reword usage message for --discordant

parent 21f6084c
Pipeline #2729 failed with stage
in 22 seconds
......@@ -155,9 +155,9 @@ Options:
-ps, --positive-samples TEXT Sample(s) in positive-vcf to consider. May be
called multiple times [required]
-s, --stats PATH Path to output stats json file [required]
-dc, --discordant PATH Path to output the discordant VCF records to
--help Show this message and exit.
```
-dc, --discordant PATH Path to output discordant VCF file
--help Show this message and exit
```
## License
......
......@@ -34,7 +34,7 @@ from .gcoverage import RefRecord, region_coverages
@click.option("-s", "--stats", type=click.Path(writable=True),
help="Path to output stats json file", required=True)
@click.option("-dc", "--discordant", type=click.Path(writable=True),
help="Path to output the discordant VCF records to",
help="Path to output discordant VCF file",
required=False)
def evaluate_cli(call_vcf, positive_vcf, call_samples, positive_samples, stats,
discordant):
......
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