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  • van den Berg's avatar
    Add test cases for truncated call vcf · c2d64d27
    van den Berg authored
    There are two ways in which a variant can be no call. The variant can be
    present in the vcf file with a ./. genotype, or the variant can be
    missing from the vcf file altogether. This commit adds a test case to
    verify that no call sites are counted properly when they are missing
    from the called vcf file.
    
    Sites that are missing from the positive vcf file do not count towards
    alleles_no_call, since we do not care about variants which are not
    present in the positive vcf file.
    c2d64d27