vtools issueshttps://git.lumc.nl/klinische-genetica/capture-lumc/vtools/-/issues2019-11-25T12:37:52+01:00https://git.lumc.nl/klinische-genetica/capture-lumc/vtools/-/issues/9vtools-filter has assumptions on chromosome names2019-11-25T12:37:52+01:00van den Bergvtools-filter has assumptions on chromosome namesvtools-filter assumes that canonical chromosomes are called `[1, 2, 3]` or `[chr1, chr2, chr3]`, and uses these contig names when deciding whether or not to filter certain variants. This is most likely not compatible with GRCh38, where t...vtools-filter assumes that canonical chromosomes are called `[1, 2, 3]` or `[chr1, chr2, chr3]`, and uses these contig names when deciding whether or not to filter certain variants. This is most likely not compatible with GRCh38, where the accession number and versions of the chromosomes are used.GRCh38