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Klinische Genetica
capture-lumc
vtools
Commits
c6821115
Commit
c6821115
authored
May 07, 2019
by
Sander Bollen
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add example json
parent
d0006b92
Pipeline
#2574
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in 1 minute and 31 seconds
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README.md
README.md
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cfg/example-filter.json
cfg/example-filter.json
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README.md
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c6821115
...
@@ -26,8 +26,8 @@ file, and a VCF file containing all the filtered-out variants.
...
@@ -26,8 +26,8 @@ file, and a VCF file containing all the filtered-out variants.
#### Configuration
#### Configuration
Configuration of filters goes by a little JSON file.
See
[
here
](
)
for an
Configuration of filters goes by a little JSON file.
example, and
[
here
](
)
for the json schema
.
See
[
here
](
cfg/example-filter.json
)
for an example
.
#### Usage
#### Usage
...
...
cfg/example-filter.json
0 → 100644
View file @
c6821115
{
"canonical_chromosomes"
:
true
,
"gq_pass"
:
7
,
"index_called"
:
true
,
"low_gnomad_af"
:
0.05
,
"low_gonl_af"
:
null
,
"gnomad_vcf"
:
"/path/to/vcf"
,
"gonl_vcf"
:
null
}
\ No newline at end of file
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