diff --git a/README.md b/README.md index c083aad42e2345a91cce4b884772ac9cb9f46078..4a76129e544bd3c898c465a651d6e17a469d5471 100644 --- a/README.md +++ b/README.md @@ -26,8 +26,8 @@ file, and a VCF file containing all the filtered-out variants. #### Configuration -Configuration of filters goes by a little JSON file. See [here]() for an -example, and [here]() for the json schema. +Configuration of filters goes by a little JSON file. +See [here](cfg/example-filter.json) for an example. #### Usage diff --git a/cfg/example-filter.json b/cfg/example-filter.json new file mode 100644 index 0000000000000000000000000000000000000000..0130356457567483466c33cc31fbc8593f807fea --- /dev/null +++ b/cfg/example-filter.json @@ -0,0 +1,9 @@ +{ + "canonical_chromosomes": true, + "gq_pass": 7, + "index_called": true, + "low_gnomad_af": 0.05, + "low_gonl_af": null, + "gnomad_vcf": "/path/to/vcf", + "gonl_vcf": null +} \ No newline at end of file