From 257600ce388e0fcb1b695222d4b310a41114dc72 Mon Sep 17 00:00:00 2001
From: Redmar van den Berg <RedmarvandenBerg@lumc.nl>
Date: Mon, 25 Nov 2019 15:37:39 +0100
Subject: [PATCH] Write to stats file instead of using print
---
vtools/cli.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/vtools/cli.py b/vtools/cli.py
index f0079b2..37ea32f 100644
--- a/vtools/cli.py
+++ b/vtools/cli.py
@@ -52,7 +52,7 @@ def evaluate_cli(call_vcf, positive_vcf, call_samples, positive_samples,
print(json.dumps(st))
else:
with click.open_file(stats, 'w') as fout:
- print(json.dumps(st), file=fout)
+ fout.write(json.dumps(st))
# If there were discordand records, and a discordant-vcf should be written
if len(disc) > 0 and discordant_vcf:
--
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