From 2b33c1067fe486f66e45fd0623ba137a569f30d2 Mon Sep 17 00:00:00 2001
From: Redmar van den Berg <RedmarvandenBerg@lumc.nl>
Date: Fri, 15 May 2020 11:18:21 +0200
Subject: [PATCH] Add tests to check * variants are removed
---
test/test-integration.yml | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/test/test-integration.yml b/test/test-integration.yml
index f1473f4..e7a66d6 100644
--- a/test/test-integration.yml
+++ b/test/test-integration.yml
@@ -46,7 +46,7 @@
--singularity-args ' --containall --bind /tmp'
--notemp
--cores 1
- 16699289_trimmed.vcf
+ 16699289_variants_ucsc.varda
files:
- path: 16699289_trimmed.vcf
must_not_contain:
@@ -57,3 +57,11 @@
- "chrM\t195\t.\tC\t*"
- "chrM\t410\t.\tA\tC"
- "chrM\t2261\t.\tC\tT"
+ - path: 16699289_single.vcf
+ - path: 16699289_no_alt_star.vcf
+ must_not_contain:
+ - "chrM\t195\t.\tC\t*"
+ contains:
+ - "chrM\t152\t.\tT\tC"
+ - "chrM\t410\t.\tA\tC"
+ - path: 16699289_variants_ucsc.varda
--
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