1. 09 Mar, 2021 3 commits
  2. 08 Mar, 2021 1 commit
  3. 04 Mar, 2021 4 commits
  4. 02 Mar, 2021 2 commits
  5. 07 Jan, 2021 2 commits
  6. 04 Jan, 2021 4 commits
  7. 10 Dec, 2020 2 commits
    • van den Berg's avatar
      Use a tmp folder for MultiQC · b1baa6de
      van den Berg authored
      MultiQC can run out of /tmp space on execution nodes on shark, leading
      to incorrect results or crashes. This commit fixes this problem by
      specifying a default location for the python tempfiles that MultiQC uses
      via the environment variable TMPFILE inside of the shell block for the
      MultiQC rule.
      b1baa6de
    • van den Berg's avatar
      Fix testing error where some test were skipped · c811ece3
      van den Berg authored
      After renaming the pytest-workflow test cases, I forgot to update all
      the marks for the tests of the stats output file, leading to some of
      them always being skipped.
      c811ece3
  8. 08 Dec, 2020 5 commits
  9. 29 Sep, 2020 1 commit
  10. 28 Sep, 2020 1 commit
  11. 02 Sep, 2020 1 commit
    • van den Berg's avatar
      Use targets file as baitsfile if it is missing · 44e1cf7e
      van den Berg authored
      Picard HsMetrics requires both a file containing the targets of the
      capture, as well as the actual baits used in the capture. However,
      Agilent is refusing to share the baits of their older capture kits.
      
      A common workaround for this issue is to simply specify the targets
      file to picard twice.
      44e1cf7e
  12. 28 Aug, 2020 1 commit
  13. 27 Aug, 2020 3 commits
  14. 26 Aug, 2020 1 commit
  15. 25 Aug, 2020 6 commits
  16. 24 Aug, 2020 3 commits