Commits · a66ab1ee483ea7d6c336b146c1350af2533f8fe8 · Klinische Genetica / capture-lumc / hutspot

28 Mar, 2019 3 commits
- add slurm-cluster-status as submodule · a66ab1ee
  Sander Bollen authored Mar 28, 2019
  
  a66ab1ee
- move yaml · e2ae59f2
  Sander Bollen authored Mar 28, 2019
  
  e2ae59f2
- move sge cluster to cluster subdirectory · 5399fc25
  Sander Bollen authored Mar 28, 2019
  
  5399fc25
27 Mar, 2019 2 commits
- double quotes · a7ee85d4
  Sander Bollen authored Mar 27, 2019
  
  a7ee85d4
- use --parsable for sbatch · 75938280
  Sander Bollen authored Mar 27, 2019
  
  75938280
26 Mar, 2019 13 commits
- fix conda bin · c893a53c
  Sander Bollen authored Mar 26, 2019
  
  c893a53c
- fix gitlab ci yaml · cbe22907
  Sander Bollen authored Mar 26, 2019
  
  cbe22907
- functional test yml · 96489f04
  Sander Bollen authored Mar 26, 2019
  
  96489f04
- Merge pull request #2 from LUMC/use-builtin-output-dir · 14eed9ee
  Sander Bollen authored Mar 26, 2019
```
Use builtin output dir
```
  14eed9ee
- fix path · 2db357e3
  Sander Bollen authored Mar 26, 2019
  
  2db357e3
- keep workflow wd · 72629365
  Sander Bollen authored Mar 26, 2019
  
  72629365
- integration tests in gitlab ci · 4aa40f5c
  Sander Bollen authored Mar 26, 2019
  
  4aa40f5c
- add ref.dict to test data · 06fe1fb7
  Sander Bollen authored Mar 26, 2019
  
  06fe1fb7
- add bwa indexes for ref · 6b467c37
  Sander Bollen authored Mar 26, 2019
  
  6b467c37
- proper pairing for tests fq files · db46f2b3
  Sander Bollen authored Mar 26, 2019
  
  db46f2b3
- fix sanity checks · 74ba06c8
  Sander Bollen authored Mar 26, 2019
  
  74ba06c8
- better indentation · ad2eb71b
  Sander Bollen authored Mar 26, 2019
  
  ad2eb71b
- fix syntax errors · ef4bf0f0
  Sander Bollen authored Mar 26, 2019
  
  ef4bf0f0
21 Mar, 2019 5 commits
- use full path in softlinks in seqtk.sh · ac58a0c1
  Sander Bollen authored Mar 21, 2019
  
  ac58a0c1
- remove OUTPUT_DIR config value · 73091256
  Sander Bollen authored Mar 21, 2019
  
  73091256
- remove out_dir calls · a62d53f9
  Sander Bollen authored Mar 21, 2019
  
  a62d53f9
- click · 1a7c51a9
  Sander Bollen authored Mar 21, 2019
  
  1a7c51a9
- fix readme on output dir · 0d5203ee
  Sander Bollen authored Mar 21, 2019
  
  0d5203ee
12 Mar, 2019 6 commits
- math doesn't work on github · 2a3b54b3
  Sander Bollen authored Mar 12, 2019
  
  2a3b54b3
- Merge branch 'licensing' into 'master' · c6bdcbee
  Sander Bollen authored Mar 12, 2019
```
Licensing

See merge request !10
```
  c6bdcbee
- add docker tags · 0bb20d61
  Sander Bollen authored Mar 12, 2019
  
  0bb20d61
- license headers to scripts · c9e11a9e
  Sander Bollen authored Mar 12, 2019
  
  c9e11a9e
- license header for snakefile · aa2f452e
  Sander Bollen authored Mar 12, 2019
  
  aa2f452e
- add main license files · 5d0de6f3
  Sander Bollen authored Mar 12, 2019
  
  5d0de6f3
19 Feb, 2019 11 commits
- Merge branch 'pytest-workflow-testing' into 'master' · 5096e6d9
  Sander Bollen authored Feb 19, 2019
```
Pytest workflow testing

See merge request !9
```
  5096e6d9
- fix · e5e5dcd2
  Sander Bollen authored Feb 19, 2019
  
  e5e5dcd2
- use tags · 7fd2ca3d
  Sander Bollen authored Feb 19, 2019
  
  7fd2ca3d
- fix java issue · d3be2d28
  Sander Bollen authored Feb 19, 2019
  
  d3be2d28
- dry run test · bed79b97
  Sander Bollen authored Feb 19, 2019
  
  bed79b97
- use pip instead of conda for sanity checks · 2ac55fcd
  Sander Bollen authored Feb 19, 2019
  
  2ac55fcd
- one last sanity check · 8ca740f7
  Sander Bollen authored Feb 19, 2019
  
  8ca740f7
- fix gitlab-ci-yaml · 3162e47e
  Sander Bollen authored Feb 19, 2019
  
  3162e47e
- add gitlab ci yaml · b39a7004
  Sander Bollen authored Feb 19, 2019
  
  b39a7004
- more sanity checks · 2b90b7d0
  Sander Bollen authored Feb 19, 2019
  
  2b90b7d0
- add a few tests · 53705872
  Sander Bollen authored Feb 19, 2019
  
  53705872