1. 30 Mar, 2020 3 commits
  2. 14 Jan, 2020 1 commit
    • van den Berg's avatar
      Use local tmp folder as java tempdir · 3c5edeb2
      van den Berg authored
      This fixes a rare bug where picard runs out of disk space on when spilling
      reads to disk, because it uses the internal java temp dir as a location. This
      closes issue #42
      3c5edeb2
  3. 13 Jan, 2020 1 commit
  4. 10 Jan, 2020 2 commits
  5. 09 Jan, 2020 3 commits
  6. 08 Jan, 2020 2 commits
  7. 20 Dec, 2019 2 commits
  8. 19 Dec, 2019 3 commits
    • van den Berg's avatar
      Add threads entry for additional fastq rule · 1c34bfc0
      van den Berg authored
      1c34bfc0
    • van den Berg's avatar
      Add threads to fastqc · 9f6eafed
      van den Berg authored
      Hutspot sometimes fails on the fastqc analysis due to Java heap space
      memory errors. It is not possible to set the memory usage by fastqc
      directly, since this is done by the perl wrapper script. However, the
      amount of memory that is set by the wrapper scales with the number of
      threads that fastqc uses. Therefore, the number of threads was
      increased, effectively increasing the memory fastqc can use.
      9f6eafed
    • van den Berg's avatar
      Increase vmem limit for multiqc · 17397839
      van den Berg authored
      17397839
  9. 12 Nov, 2019 1 commit
  10. 25 Oct, 2019 3 commits
  11. 22 Oct, 2019 1 commit
  12. 17 Sep, 2019 5 commits
  13. 29 Aug, 2019 3 commits
  14. 28 Aug, 2019 1 commit
  15. 29 Jul, 2019 1 commit
  16. 17 Jul, 2019 1 commit
  17. 12 Jun, 2019 2 commits
  18. 03 Jun, 2019 2 commits
  19. 31 May, 2019 3 commits