Commit ecc12cc2 authored by van den Berg's avatar van den Berg
Browse files

Remove python imports from the main snakemake file

parent 5f215391
Pipeline #4059 passed with stages
in 41 minutes and 4 seconds
......@@ -21,13 +21,6 @@ Main Snakefile for the pipeline.
:license: AGPL-3.0
"""
import json
import jsonschema
from functools import partial
from os.path import join, basename
from pathlib import Path
import itertools
include: "common.smk"
process_config()
......
import itertools
import json
import jsonschema
import os
containers = {
'bcftools': 'docker://quay.io/biocontainers/bcftools:1.9--ha228f0b_4',
'bedtools-2.26-python-2.7': 'docker://quay.io/biocontainers/mulled-v2-3251e6c49d800268f0bc575f28045ab4e69475a6:4ce073b219b6dabb79d154762a9b67728c357edb-0',
......
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