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Klinische Genetica
capture-lumc
hutspot
Commits
e12cbb90
Commit
e12cbb90
authored
Apr 21, 2020
by
van den Berg
Browse files
Remove docker image from slurm runner
parent
5c395116
Pipeline
#3616
failed with stages
in 2 minutes and 35 seconds
Changes
1
Pipelines
1
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.gitlab-ci.yml
View file @
e12cbb90
...
...
@@ -9,7 +9,6 @@ variables:
.singularity_before_script_anchor
:
&singularity_before_script_anchor
before_script
:
-
apt update -y && apt install python3-pip -y
-
pip3 install -r requirements.txt
-
pip3 install -r requirements-dev.txt
-
export BASETEMP=$RUN_BASE_DIR/$CI_COMMIT_REF_NAME/$CI_JOB_ID
...
...
@@ -44,7 +43,6 @@ test_integration:
<<
:
*singularity_before_script_anchor
script
:
-
pytest-3 --tag integration --basetemp ${BASETEMP} --keep-workflow-wd
image
:
lumc/singularity-snakemake:3.5.2-5.9.1
tags
:
-
slurm
stage
:
integration
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