Commit e12cbb90 authored by van den Berg's avatar van den Berg
Browse files

Remove docker image from slurm runner

parent 5c395116
Pipeline #3616 failed with stages
in 2 minutes and 35 seconds
......@@ -9,7 +9,6 @@ variables:
.singularity_before_script_anchor: &singularity_before_script_anchor
before_script:
- apt update -y && apt install python3-pip -y
- pip3 install -r requirements.txt
- pip3 install -r requirements-dev.txt
- export BASETEMP=$RUN_BASE_DIR/$CI_COMMIT_REF_NAME/$CI_JOB_ID
......@@ -44,7 +43,6 @@ test_integration:
<<: *singularity_before_script_anchor
script:
- pytest-3 --tag integration --basetemp ${BASETEMP} --keep-workflow-wd
image: lumc/singularity-snakemake:3.5.2-5.9.1
tags:
- slurm
stage: integration
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