Commit dfb090d0 authored by van den Berg's avatar van den Berg
Browse files

set BASETEMP and remove functional tag

parent 13104ddf
Pipeline #3613 failed with stages
in 2 minutes and 12 seconds
...@@ -11,7 +11,6 @@ stages: ...@@ -11,7 +11,6 @@ stages:
- sanity - sanity
- dry-run - dry-run
- integration - integration
- functional
test_sanities: test_sanities:
<<: *docker_before_script_anchor <<: *docker_before_script_anchor
...@@ -33,23 +32,12 @@ test_dry_run: ...@@ -33,23 +32,12 @@ test_dry_run:
test_integration: test_integration:
<<: *docker_before_script_anchor
before_script: before_script:
- export BASETEMP=$(mktemp -p ${RUN_BASE_DIR} -d) - export BASETEMP=$RUN_BASE_DIR/$CI_COMMIT_REF_NAME/$CI_JOB_ID
script: script:
- pytest-3 --tag integration --basetemp ${BASETEMP} --keep-workflow-wd - pytest-3 --tag integration --basetemp ${BASETEMP} --keep-workflow-wd
image: lumc/singularity-snakemake:3.5.2-5.9.1 image: lumc/singularity-snakemake:3.5.2-5.9.1
tags: tags:
- slurm - slurm
stage: integration stage: integration
test_functional:
before_script:
- export BASETEMP=$(mktemp -p ${RUN_BASE_DIR} -d)
script:
- pytest-3 --tag functional --basetemp ${BASETEMP} --keep-workflow-wd
tags:
- slurm
stage: functional
only:
- schedules
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