Commit dfb090d0 authored by van den Berg's avatar van den Berg
Browse files

set BASETEMP and remove functional tag

parent 13104ddf
Pipeline #3613 failed with stages
in 2 minutes and 12 seconds
......@@ -11,7 +11,6 @@ stages:
- sanity
- dry-run
- integration
- functional
test_sanities:
<<: *docker_before_script_anchor
......@@ -33,23 +32,12 @@ test_dry_run:
test_integration:
<<: *docker_before_script_anchor
before_script:
- export BASETEMP=$(mktemp -p ${RUN_BASE_DIR} -d)
- export BASETEMP=$RUN_BASE_DIR/$CI_COMMIT_REF_NAME/$CI_JOB_ID
script:
- pytest-3 --tag integration --basetemp ${BASETEMP} --keep-workflow-wd
image: lumc/singularity-snakemake:3.5.2-5.9.1
tags:
- slurm
stage: integration
test_functional:
before_script:
- export BASETEMP=$(mktemp -p ${RUN_BASE_DIR} -d)
script:
- pytest-3 --tag functional --basetemp ${BASETEMP} --keep-workflow-wd
tags:
- slurm
stage: functional
only:
- schedules
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