Commit d3be2d28 authored by Sander Bollen's avatar Sander Bollen
Browse files

fix java issue

parent bed79b97
Pipeline #2382 failed with stage
in 34 seconds
- name: test-dry-run
command: >
command: >-
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=teststtest/
JAVA=$(which java) REFERENCE=tests/data/ref.fa GATK=README.md
JAVA=/usr/bin/java REFERENCE=tests/data/ref.fa GATK=README.md
DBSNP=tests/data/database.vcf.gz ONETHOUSAND=tests/data/database.vcf.gz
HAPMAP=tests/data/database.vcf.gz
SAMPLE_CONFIG=tests/data/sample_config.json
......
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