Increase scatterregion memory limit

ae8ea7e5 · van den Berg · 60fd2489 · ae8ea7e5 · ae8ea7e5
Commit ae8ea7e5 authored Apr 30, 2020 by van den Berg
--- a/Snakefile
+++ b/Snakefile
@@ -231,7 +231,7 @@ checkpoint scatterregions:
        directory("scatter")
    singularity: containers["biopet-scatterregions"]
    shell: "mkdir -p {output} && "
-           "biopet-scatterregions -Xmx8G "
+           "biopet-scatterregions -Xmx24G "
           "--referenceFasta {input.ref} --scatterSize {params.size} "
           "--outputDir scatter"


--- a/cluster/sge_cluster.yml
+++ b/cluster/sge_cluster.yml
@@ -34,4 +34,4 @@ fastqc_merged:
 fastqc_postqc:
  threads: 4
 scatterregions:
-  vmem: 10G
+  vmem: 30G