Increase memory for bed_to_interval

a4e1aadb · van den Berg · 1b7d807f · a4e1aadb
Commit a4e1aadb authored Jul 24, 2020 by van den Berg
--- a/Snakefile
+++ b/Snakefile
@@ -477,7 +477,7 @@ rule bed_to_interval:
        baits_interval = "baits.interval"
    output:
    container: containers["picard"]
-    shell: "picard BedToIntervalList "
+    shell: "picard -Xmx4G BedToIntervalList "
            "I={input.targets} O={output.target_interval} "
            "SD={input.ref} && "
            "picard BedToIntervalList "