vcfstats env

.gitlab-ci.yml

@@ -31,6 +31,8 @@ test_dry_run:
   stage: dry-run
 
 
+# this requires a priviliged docker container.
+# most docker runners will not do this
 test_integration_singularity:
   before_script:
     - apt-get update && apt-get install -y python3-pip

envs/vcfstats.yml

@@ -25,14 +25,13 @@ dependencies:
 - gst-plugins-base=1.8.0=0
 - gstreamer=1.8.0=1
 - humanfriendly=4.4=py36_0
-- icu=58.2=0
 - jpeg=9b=2
 - libffi=3.2.1=3
 - libiconv=1.15
 - libpng=1.6.34=0
 - libxcb=1.12=1
 - libxml2=2.9.7=0
-- matplotlib=2.1.2=py36_0
+- matplotlib=2.1.2
 - ncurses=5.9=10
 - numpy=1.14.1=py36_blas_openblas_200
 - openblas=0.2.20=7