use tags

.gitlab-ci.yml

@@ -6,4 +6,8 @@ before_script:
 
 test_sanities:
   script:
-    - py.test
+    - py.test --tag sanity
+
+test_dry_run:
+  script:
+    - py.test --tag dry-run

tests/test_dry_run.yml

@@ -15,3 +15,5 @@
   stderr:
     must_not_contain:
       - "rror"
+  tags:
+    - dry-run

tests/test_sanity_checks.yml

@@ -4,12 +4,16 @@
   stdout:
     contains:
       - "You must set --config OUT_DIR=<path>"
+  tags:
+      - sanity
 - name: test-no-reference
   command: snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/teststtest/
   exit_code: 1
   stdout:
     contains:
       - "You must set --config REFERENCE=<path>"
+  tags:
+    - sanity
 - name: test-reference-does-not-exist
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/teststtest/
@@ -18,6 +22,8 @@
   stdout:
     contains:
       - "Reference file /very/unlikely/to/exist does not exist"
+  tags:
+    - sanity
 - name: test-no-java
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -26,6 +32,8 @@
   stdout:
     contains:
       - "You must set --config JAVA=<path>"
+  tags:
+    - sanity
 - name: test-java-does-not-exist
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -34,6 +42,8 @@
   stdout:
     contains:
       - "/very/unlikely/to/exist does not exist"
+  tags:
+    - sanity
 - name: test-no-gatk
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -42,6 +52,8 @@
   stdout:
     contains:
       - "You must set --config GATK=<path>"
+  tags:
+    - sanity
 - name: test-gatk-does-not-exist
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -50,6 +62,8 @@
   stdout:
     contains:
        - "/very/unlikely/to/exist does not exist"
+  tags:
+    - sanity
 - name: test-no-dbsnp
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -58,6 +72,8 @@
   stdout:
     contains:
       - "You must set --config DBSNP=<path>"
+  tags:
+    - sanity
 - name: test-dbsnp-does-not-exist
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -67,6 +83,8 @@
   stdout:
     contains:
        - "/very/unlikely/to/exist does not exist"
+  tags:
+    - sanity
 - name: test-no-onethousand
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -75,6 +93,8 @@
   stdout:
     contains:
       - "You must set --config ONETHOUSAND=<path>"
+  tags:
+    - sanity
 - name: test-onethousand-does-not-exist
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -84,6 +104,8 @@
   stdout:
     contains:
       - "/very/unlikely/to/exist does not exist"
+  tags:
+    - sanity
 - name: test-no-hapmap
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -93,6 +115,8 @@
   stdout:
     contains:
       - "You must set --config HAPMAP=<path>"
+  tags:
+    - sanity
 - name: test-hapmap-does-not-exist
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -102,6 +126,8 @@
   stdout:
     contains:
       - "/very/unlikely/to/exist does not exist"
+  tags:
+    - sanity
 - name: test-no-sample-config
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -111,6 +137,8 @@
   stdout:
     contains:
       - "You must set --config SAMPLE_CONFIG=<path>"
+  tags:
+    - sanity
 - name: test-sample-config-does-not-exist
   command: >
     snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
@@ -121,3 +149,5 @@
   stdout:
     contains:
       - "/very/unlikely/to/exist does not exist"
+  tags:
+    - sanity