Commit 7fd2ca3d authored by Sander Bollen's avatar Sander Bollen
Browse files

use tags

parent d3be2d28
Pipeline #2383 failed with stage
in 1 minute and 3 seconds
......@@ -6,4 +6,8 @@ before_script:
test_sanities:
script:
- py.test
- py.test --tag sanity
test_dry_run:
script:
- py.test --tag dry-run
......@@ -15,3 +15,5 @@
stderr:
must_not_contain:
- "rror"
tags:
- dry-run
......@@ -4,12 +4,16 @@
stdout:
contains:
- "You must set --config OUT_DIR=<path>"
tags:
- sanity
- name: test-no-reference
command: snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/teststtest/
exit_code: 1
stdout:
contains:
- "You must set --config REFERENCE=<path>"
tags:
- sanity
- name: test-reference-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/teststtest/
......@@ -18,6 +22,8 @@
stdout:
contains:
- "Reference file /very/unlikely/to/exist does not exist"
tags:
- sanity
- name: test-no-java
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -26,6 +32,8 @@
stdout:
contains:
- "You must set --config JAVA=<path>"
tags:
- sanity
- name: test-java-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -34,6 +42,8 @@
stdout:
contains:
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
- name: test-no-gatk
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -42,6 +52,8 @@
stdout:
contains:
- "You must set --config GATK=<path>"
tags:
- sanity
- name: test-gatk-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -50,6 +62,8 @@
stdout:
contains:
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
- name: test-no-dbsnp
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -58,6 +72,8 @@
stdout:
contains:
- "You must set --config DBSNP=<path>"
tags:
- sanity
- name: test-dbsnp-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -67,6 +83,8 @@
stdout:
contains:
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
- name: test-no-onethousand
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -75,6 +93,8 @@
stdout:
contains:
- "You must set --config ONETHOUSAND=<path>"
tags:
- sanity
- name: test-onethousand-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -84,6 +104,8 @@
stdout:
contains:
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
- name: test-no-hapmap
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -93,6 +115,8 @@
stdout:
contains:
- "You must set --config HAPMAP=<path>"
tags:
- sanity
- name: test-hapmap-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -102,6 +126,8 @@
stdout:
contains:
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
- name: test-no-sample-config
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -111,6 +137,8 @@
stdout:
contains:
- "You must set --config SAMPLE_CONFIG=<path>"
tags:
- sanity
- name: test-sample-config-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
......@@ -121,3 +149,5 @@
stdout:
contains:
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
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