Commit 78fa900d authored by Sander Bollen's avatar Sander Bollen
Browse files

add report to all rule

parent 3377b00b
......@@ -133,6 +133,7 @@ def metrics(do_metrics=True):
rule all:
input:
combined=out_path("multisample/genotyped.vcf.gz"),
report=out_path("multiqc_report/multiqc_report.html"),
bais=expand(out_path("{sample}/bams/{sample}.markdup.bam.bai"),
sample=SAMPLES),
stats=metrics()
......
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