From 7761e63fa393cb9bd2d0bbd1d051839dd249ff43 Mon Sep 17 00:00:00 2001
From: Redmar van den Berg <RedmarvandenBerg@lumc.nl>
Date: Wed, 10 Mar 2021 16:32:14 +0100
Subject: [PATCH] Add conda cache
---
.github/workflows/ci.yml | 21 ++++++++++++++++++---
1 file changed, 18 insertions(+), 3 deletions(-)
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 3b63ee6..8c1a6ce 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -18,16 +18,31 @@ jobs:
steps:
- uses: actions/checkout@v2
- - uses: eWaterCycle/setup-singularity@v6
+ - name: Install singularity
+ uses: eWaterCycle/setup-singularity@v6
with:
singularity-version: 3.6.4
- - uses: conda-incubator/setup-miniconda@v2.0.1
+ - name: Cache conda environment
+ uses: actions/cache@v2
+ env:
+ cache-name: cache-conda-environment
+ # Increase this value to reset the cache without changing
+ # environment.yml
+ cache-number: 0
+ with:
+ path: ~/conda_pkgs_dir
+ key: build-${{ env.cache-name }}-${{ env.cache-number }}-{{ hashFiles('environment.yml') }}
+
+ - name: Install miniconda
+ uses: conda-incubator/setup-miniconda@v2.0.1
# https://github.com/conda-incubator/setup-miniconda.
+ # https://github.com/marketplace/actions/setup-miniconda
with:
activate-environment: hutspot
environment-file: environment.yml
auto-activate-base: false
+ use-only-tar-bz2: true
- name: Run test in conda evironment
# Use --symlink to limit disk usage.
@@ -54,7 +69,7 @@ jobs:
if: ${{ failure() }}
run: >-
bash -c '
- for file in $(find /tmp/pytest_workflow_*/log/ -type f); do
+ for file in $(find /tmp/pytest_workflow_*/${{ matrix.test}}/log/ -type f); do
echo $file; cat $file
done
'
--
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