Commit 72414f79 authored by Sander Bollen's avatar Sander Bollen
Browse files

output flag to multiqc is directory, not a file

parent 97551999
......@@ -593,8 +593,9 @@ rule multiqc:
input:
stats=out_path("stats.json")
params:
odir=out_path(".")
odir=out_path("."),
rdir=out_path("multiqc_report")
output:
report=out_path("multiqc_report/multiqc_report.html")
conda: "envs/multiqc.yml"
shell: "multiqc -o {output.report} {params.odir}"
shell: "multiqc -o {params.rdir} {params.odir}"
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