From 57d068c7e50dc2056a738a350d506f05c607a7eb Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Wed, 29 Nov 2017 11:38:47 +0100
Subject: [PATCH] add example config and schema
---
config/example.json | 24 ++++++++++++++++++++++++
config/schema.json | 30 ++++++++++++++++++++++++++++++
2 files changed, 54 insertions(+)
create mode 100644 config/example.json
create mode 100644 config/schema.json
diff --git a/config/example.json b/config/example.json
new file mode 100644
index 0000000..1811c84
--- /dev/null
+++ b/config/example.json
@@ -0,0 +1,24 @@
+{
+ "samples": {
+ "sample_01": {
+ "libraries": {
+ "lib_l1": {
+ "R1": "1.fq.gz",
+ "R2": "2.fq.gz"
+ },
+ "lib_l2": {
+ "R1": "1.1.fq.gz",
+ "R2": "1.2.fq.gz"
+ }
+ }
+ },
+ "sample_02": {
+ "libraries": {
+ "lib_l1": {
+ "R1": "3.1.fq.gz",
+ "R2": "3.2.fq.gz"
+ }
+ }
+ }
+ }
+}
diff --git a/config/schema.json b/config/schema.json
new file mode 100644
index 0000000..6b932fc
--- /dev/null
+++ b/config/schema.json
@@ -0,0 +1,30 @@
+{
+ "$schema": "http://json-schema.org/draft-04/schema#",
+ "description": "JSON schema for samples config for the hutspot pipeline",
+ "type": "object",
+ "required": ["samples"],
+ "properties": {
+ "samples": {
+ "type": "object",
+ "additionalProperties": {
+ "description": "sample object",
+ "type": "object",
+ "required": ["libraries"],
+ "properties": {
+ "libraries": {
+ "type": "object",
+ "additionalProperties": {
+ "description": "library",
+ "type": "object",
+ "required": ["R1", "R2"],
+ "properties": {
+ "R1": {"type": "string"},
+ "R2": {"type": "string"}
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+}
--
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