Commit 410ce78e authored by van den Berg's avatar van den Berg
Browse files

Merge remote-tracking branch 'origin/no-pg' into speedup

parents 44e1cf7e 5d4fca8a
Pipeline #4240 passed with stages
in 100 minutes and 38 seconds
......@@ -138,6 +138,7 @@ rule markdup:
containers["picard"]
shell:
"picard -Xmx4G -Djava.io.tmpdir={input.tmp} MarkDuplicates "
"PROGRAM_RECORD_ID=null "
"CREATE_INDEX=TRUE TMP_DIR={input.tmp} "
"{params.bams} OUTPUT={output.bam} "
"METRICS_FILE={output.metrics} "
......
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