Commit 3481d929 authored by van den Berg's avatar van den Berg
Browse files

Mark FastQC input for MultiQC as directory

parent 81e3bcf2
Pipeline #3989 passed with stages
in 37 minutes and 7 seconds
......@@ -524,10 +524,10 @@ rule multiqc:
"{sample}/bams/{sample}.insert_size_metrics",
sample=config["samples"]
),
fastqc_raw = (f"{sample}/pre_process/raw-{sample}-{read_group}/"
fastqc_raw = (directory(f"{sample}/pre_process/raw-{sample}-{read_group}/")
for read_group, sample in get_readgroup_per_sample()),
fastqc_trim = (f"{sample}/pre_process/trimmed-{sample}-{read_group}/"
fastqc_trim = (directory(f"{sample}/pre_process/trimmed-{sample}-{read_group}/")
for read_group, sample in get_readgroup_per_sample()),
hs_metric = expand("{sample}/bams/{sample}.hs_metrics.txt",
......
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