From 2a93a74f6d70363aed2f13a32acaa4f4dd84e1cb Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Wed, 29 Nov 2017 09:55:33 +0100
Subject: [PATCH] collectstats should be an argument in mergestats
---
src/merge_stats.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/merge_stats.py b/src/merge_stats.py
index 74a42e1..38841a8 100644
--- a/src/merge_stats.py
+++ b/src/merge_stats.py
@@ -12,7 +12,7 @@ def parse_json(path):
type=click.Path(exists=True, dir_okay=False, readable=True),
required=True,
help="Path to vcfstats json")
-@click.option("collectstats",
+@click.argument("collectstats",
type=click.Path(exists=True, dir_okay=False, readable=True),
nargs=-1,
required=True)
--
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