diff --git a/src/merge_stats.py b/src/merge_stats.py index 74a42e1a0ebaf32e619c27c19e20c446f8ad243b..38841a8eab028ac42d040d844b7dbd7c737a2785 100644 --- a/src/merge_stats.py +++ b/src/merge_stats.py @@ -12,7 +12,7 @@ def parse_json(path): type=click.Path(exists=True, dir_okay=False, readable=True), required=True, help="Path to vcfstats json") -@click.option("collectstats", +@click.argument("collectstats", type=click.Path(exists=True, dir_okay=False, readable=True), nargs=-1, required=True)