Commit 225f4488 authored by van den Berg's avatar van den Berg
Browse files

Merge branch 'gvcf-bin' into devel

parents a5195446 6e3205d1
Pipeline #3587 failed with stages
in 14 seconds
......@@ -254,7 +254,9 @@ rule gvcf_scatter:
"{input.bam} -R {input.ref} -D {input.dbsnp} "
"-L '{input.region}' -o '{output.gvcf}' "
"-variant_index_type LINEAR -variant_index_parameter 128000 "
"-BQSR {input.bqsr}"
"-BQSR {input.bqsr} "
"--GVCFGQBands 20 --GVCFGQBands 40 --GVCFGQBands 60 "
"--GVCFGQBands 80 --GVCFGQBands 100 "
def aggregate_gvcf(wildcards):
checkpoint_output = checkpoints.scatterregions.get(**wildcards).output[0]
......
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