Commit 1ad2f17f authored by van den Berg's avatar van den Berg
Browse files

Don't use multiple worker threads for integration

It appears this triggers some weird bug when used in combination with
bwa-mem2, which causes the alignment rule to crash randomly.
parent b8e7e268
Pipeline #4099 failed with stages
in 98 minutes and 7 seconds
...@@ -46,7 +46,7 @@ test_dry_run: ...@@ -46,7 +46,7 @@ test_dry_run:
test_integration: test_integration:
<<: *singularity_before_script_anchor <<: *singularity_before_script_anchor
script: script:
- pytest --tag integration --basetemp ${BASETEMP} --keep-workflow-wd --workflow-threads 8 - pytest --tag integration --basetemp ${BASETEMP} --keep-workflow-wd
tags: tags:
- slurm - slurm
stage: integration stage: integration
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