Commit 0dff1b37 authored by van den Berg's avatar van den Berg
Browse files

Use python f-string for formatting

parent aa37905b
......@@ -236,7 +236,7 @@ rule baserecal:
known_sites = " ".join(
expand("-knownSites {vcf}", vcf=config["known_sites"])
region = "-L "+ config["restrict_BQSR"] if "restrict_BQSR" in config else "",
region = f"-L {config['restrict_BQSR']}" if "restrict_BQSR" in config else "",
gatk_jar = config["gatk_jar"],
bams = bqsr_bam_input
container: containers["gatk"]
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